PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G342200.3
Common NameB456_007G342200, LOC105761438
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 1131aa    MW: 125695 Da    PI: 9.4035
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G342200.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.4e-094580340
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                         W++ E e++++a +++G++ Wk++a+ +  +R+++++
  Gorai.007G342200.3 45 QWSKAEIEQFYKAYREHGKD-WKKVAAAVH-NRSAEMV 80
                        6*****************99.*********.***9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.34E-94188IPR009057Homeodomain-like
SMARTSM007171.3E-44290IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-54581IPR009057Homeodomain-like
PfamPF002496.9E-84580IPR001005SANT/Myb domain
CDDcd001674.79E-64680No hitNo description
SMARTSM011352.1E-50630731IPR033471DIRP domain
PfamPF065849.1E-31630730IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1131 aa     Download sequence    Send to blast
MAPTRKSKSV NKQYSSVYEV SPDKNAGNSR KSKAKKKLTD KLGTQWSKAE IEQFYKAYRE  60
HGKDWKKVAA AVHNRSAEMV EALYSMNRAY LSLPDGTASV IGLIAMMTDH YNVLGVSDGE  120
RESNKPSDMS EKVQKRKRAK VHLESSKEDV VQPRSIASSE GCLSLLKRAG LNGILPHACR  180
KRTPRVPVSY SYRRDDTESF VPPIKRIKKS EVDDKDDEHV AALTLTGTLQ KGGSPCASRS  240
PYKITERRRS SPVRSYYRML PQSETSKAEL HDSSYECWME GGPGGIELAS GTYARDRGPL  300
MDMDGIGTVE VHRKGKNFYR KKIKVEESKN NLSDDGGEAC SGTEGIVGNA LKGKVDMEIS  360
SAKKKLSSCT ERKRTKKHVL GDQSCALDAL LALANLSSVV PTSITESESS VKLKEDRTTF  420
EVDDQSSVPE AASITHHRDK IKQPRPNKKV LNLLNGAEDD SSRKSTVSEP KQQQEPSNNS  480
RKRKQKPYVS KISSSEAPMD SRLRKHFDNE EMAKEEKKYL TKSKCASQQT SFRVPEGSVT  540
NNDPKMAGID SVVSTSQVPA SDPVSLPTKH QSRRKMNLKR ALLSTHKNSS VCTLKNQPNN  600
HSVPPDTPKE MLSSCLSSNL ARRWCCFEWF YSAIDYAWFA KREFVEYLNH VSLDHIPRLT  660
RVEWGVIRSS LGKPRRLSEH FLLEEREKLK QYRESVRQHY TQLRVGTREG LATDLAPPLC  720
VGQRVIAIHP KTREVHDGKV LTVDHDRCRV QFDSPDLGVE FVMDIDCMPL NPLENMPETL  780
KKQNLAFNQF SLAPRGSQGN RHLELGGPEV FTSCGCVENA TSPVNINPIK VDAKRTLLHG  840
KPALPHVVSA HQAAYDQPLR IAHIQGREAD IRAMSELSHA LDKKEALLSE LRNTNDIIEN  900
QNGESCLKAS SALLNLRQRN TYPANPLLPW QKHPTNLDFL GGLTSCSFDS SLISPEAGCV  960
VGDIINGSTL KARAMVDAAI KALSSMKEGE DVFKRIGEAL NIVDKKQITS DISMPAIKSP  1020
EQNQVNGSLS ITSKPMATTG WAPNPKLQEA SNKNEEQVPL ELITSCVSTL LMIQRCTERQ  1080
FPPADVAQII DSAITSLHPC CPQNLPIYRE IQMCMGKIKT QILALIPTLI *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1479484SRKRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ9082289e-65DQ908228.1 Gossypium hirsutum clone LIB5327-014-A1-N1-B10_Gh288 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012434696.10.0PREDICTED: protein ALWAYS EARLY 2-like isoform X4
SwissprotQ6A3330.0ALY2_ARATH; Protein ALWAYS EARLY 2
TrEMBLA0A0D2PIX70.0A0A0D2PIX7_G
STRINGGLYMA10G29481.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]